Biometrics - Supported Publications

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The following selected publications were supported by the Biometrics shared resource:

  1. Mehnert JM, Tan AR, Moss R, Poplin E, Stein MN, Sovak M, Levinson K, Lin H, Kane M, Gounder M, Lin Y, Shih WJ, White E, Rubin EH, Karantza V. Rationally designed treatment for solid tumors with MAPK pathway activation: a phase I study of paclitaxel and bortezomib using an adaptive dose-finding approach. Mol Cancer Ther. 2011;10(8):1509-19. doi: 10.1158/1535-7163.MCT-10-0944.  PubMed PMID: 21680752;  PMCID: PMC3155243.
  2. Zheng X, Cui XX, Gao Z, Zhao Y, Shi Y, Huang MT, Liu Y, Wagner GC, Lin Y, Shih WJ, Rao CV, Yang CS, Conney AH. Inhibitory effect of dietary atorvastatin and celecoxib together with voluntary running wheel exercise on the progression of androgen-dependent LNCaP prostate tumors to androgen independence. Exp Ther Med. 2011;2(2):221-28. doi: 10.3892/etm.2011.203.  PubMed PMID: 21660218;  PMCID: PMC3109910.
  3. Luo X, Li M, Shih WJ, Ouyang P. Estimation of treatment effect following a clinical trial with adaptive design. J Biopharm Stat. 2012;22(4):700-18. doi: 10.1080/10543406.2012.676534.  PubMed PMID: 22651110;  PMCID:  (The citation has been submitted. NIHMS ID: 932096)
  4. Little RJ, Cohen ML, Dickersin K, Emerson SS, Farrar JT, Neaton JD, Shih W, Siegel JP, Stern H. The design and conduct of clinical trials to limit missing data. Stat Med. 2012;31(28):3433-43. doi: 10.1002/sim.5519.  PubMed PMID: 22829439;  PMCID: (The citation has been submitted. NIHMS ID: 932098)
  5. Little RJ, D'Agostino R, Cohen ML, Dickersin K, Emerson SS, Farrar JT, Frangakis C, Hogan JW, Molenberghs G, Murphy SA, Neaton JD, Rotnitzky A, Scharfstein D, Shih WJ, Siegel JP, Stern H. The prevention and treatment of missing data in clinical trials. N Engl J Med. 2012;367(14):1355-60. doi: 10.1056/NEJMsr1203730.  PubMed PMID: 23034025;  PMCID: PMC3771340.
  6. Kim JH, Ha YS, Jeong SJ, Kim S, Kim WJ, Jang TL, Kim IY. Factors related to patient-perceived satisfaction after robot-assisted radical prostatectomy based on the expanded prostate cancer index composite survey. Prostate Cancer Prostatic Dis. 2013;16(4):341-5. doi: 10.1038/pcan.2013.24. PubMed PMID: 23917307;  PMCID: PMC5767467 
  7. Fang F, Lin Y, Shih WJ, Li Y, Yang J, Zhang X. Methods of designing two-stage winner trials with survival outcomes. Stat Med. 2014;33(9):1539-63. doi: 10.1002/sim.6070.  PubMed PMID: 24347247;  PMCID: PMC3976764.
  8. Wu Y, Lin Y, Lu SE, Li CS, Shih WJ. Extension of a Cox proportional hazards cure model when cure information is partially known. Biostatistics. 2014;15(3):540-54. doi: 10.1093/biostatistics/kxu002.  PubMed PMID: 24511081;  PMCID: PMC4059463.
  9. Shao YH, Kim S, Moore DF, Shih W, Lin Y, Stein M, Kim IY, Lu-Yao GL. Cancer-specific survival after metastasis following primary radical prostatectomy compared with radiation therapy in prostate cancer patients: results of a population-based, propensity score-matched analysis. Eur Urol. 2014;65(4):693-700. doi: 10.1016/j.eururo.2013.05.023.  PubMed PMID: 23759328;  PMCID: PMC3825778.
  10. Hyman DM, Puzanov I, Subbiah V, Faris JE, Chau I, Blay JY, Wolf J, Raje NS, Diamond EL, Hollebecque A, Gervais R, Elez-Fernandez ME, Italiano A, Hofheinz RD, Hidalgo M, Chan E, Schuler M, Lasserre SF, Makrutzki M, Sirzen F, Veronese ML, Tabernero J, Baselga J. Vemurafenib in Multiple Nonmelanoma Cancers with BRAF V600 Mutations. N Engl J Med. 2015;373(8):726-36. doi: 10.1056/NEJMoa1502309.  PubMed PMID: 26287849;  PMCID: PMC4971773.
  11. Jabbour SK, Kim S, Haider SA, Xu X, Wu A, Surakanti S, Aisner J, Langenfeld J, Yue NJ, Haffty BG, Zou W. Reduction in Tumor Volume by Cone Beam Computed Tomography Predicts Overall Survival in Non-Small Cell Lung Cancer Treated With Chemoradiation Therapy. Int J Radiat Oncol Biol Phys. 2015;92(3):627-33. doi: 10.1016/j.ijrobp.2015.02.017.  PubMed PMID: 26068495;  PMCID: PMC576747
  12. Yue W, Wang T, Zachariah E, Lin Y, Yang CS, Xu Q, DiPaola RS, Tan XL. Transcriptomic analysis of pancreatic cancer cells in response to metformin and aspirin: an implication of synergy. Sci Rep. 2015;5:13390. doi: 10.1038/srep13390.  PubMed PMID: 26294325;  PMCID: PMC4543968.
  13. Das Gupta S, Sae-tan S, Wahler J, So JY, Bak MJ, Cheng LC, Lee MJ, Lin Y, Shih WJ, Shull JD, Safe S, Yang CS, Suh N. Dietary gamma-Tocopherol-Rich Mixture Inhibits Estrogen-Induced Mammary Tumorigenesis by Modulating Estrogen Metabolism, Antioxidant Response, and PPARgamma. Cancer Prev Res (Phila). 2015;8(9):807-16. doi: 10.1158/1940-6207.CAPR-15-0154.  PubMed PMID: 26130252;  PMCID: PMC4560648.
  14. Kim S, Patel AN, Nelson C, Shen S, Mayer T, Moore DF, Lu-Yao GL. Does Certificate of Need Minimize Intensity Modulated Radiation Therapy Use in Patients with Low Risk Prostate Cancer? Urol Pract. 2016;3(5):342-48. doi: 10.1016/j.urpr.2015.09.001.  PubMed PMID: 29057297;  PMCID: PMC5648073.
  15. Lu-Yao GL, Kim S, Moore DF, Shih W, Lin Y, DiPaola RS, Shen S, Zietman A, Yao SL. Primary radiotherapy vs conservative management for localized prostate cancer--a population-based study. Prostate Cancer Prostatic Dis. 2015;18(4):317-24. doi: 10.1038/pcan.2015.30.  PubMed PMID: 26101187;  PMCID: PMC5518310.
  16. Deek MP, Benenati B, Kim S, Chen T, Ahmed I, Zou W, Aisner J, Jabbour SK. Thoracic Vertebral Body Irradiation Contributes to Acute Hematologic Toxicity During Chemoradiation Therapy for Non-Small Cell Lung Cancer. Int J Radiat Oncol Biol Phys. 2016;94(1):147-54. doi: 10.1016/j.ijrobp.2015.09.022.  PubMed PMID: 26700708;  PMCID: PMC5767469
  17. Deek MP, Kim S, Ahmed I, Fang BS, Zou W, Malhotra J, Aisner J, Jabbour SK. Prognostic Impact of Missed Chemotherapy Doses During Chemoradiation Therapy for Non-Small Cell Lung Cancer. Am J Clin Oncol. 2016 doi: 10.1097/COC.0000000000000293.  PubMed PMID: 27322697;  PMCID: PMC5767542
  18. Deek MP, Nagarajan S, Kim S, Ahmed I, Paul S, Scher ED, Listo M, Chen A, Aisner J, Hussain S, Haffty BG, Jabbour SK. Clinical characteristics and dose-volume histogram parameters associated with the development of pleural effusions in non-small cell lung cancer patients treated with chemoradiation therapy. Acta Oncol. 2016;55(8):1029-35. doi: 10.1080/0284186X.2016.1176248.  PubMed PMID: 27219912;  PMCID: PMC5767470
  19. Tian S, Paster LF, Kim S, Kirstein L, Haffty BG, Ferro A, Amorosa J, Goyal S. Comparison of Mammographic Changes Across Three Different Fractionation Schedules for Early-Stage Breast Cancer. Int J Radiat Oncol Biol Phys. 2016;95(2):597-604. doi: 10.1016/j.ijrobp.2016.01.056.  PubMed PMID: 27034177;  PMCID: PMC5767466
  20. Yoon JJ, Green WR, Kim S, Kearney T, Haffty BG, Eladoumikdachi F, Goyal S. Oncoplastic breast surgery in the setting of breast-conserving therapy: A systematic review. Adv Radiat Oncol. 2016;1(4):205-15. doi: 10.1016/j.adro.2016.09.002.  PubMed PMID: 28740889;  PMCID: PMC5514175.
  21. Kwon YS, Han CS, Yu JW, Kim S, Modi P, Davis R, Park JH, Lee P, Ha YS, Kim WJ, Kim IY. Neutrophil and Lymphocyte Counts as Clinical Markers for Stratifying Low-Risk Prostate Cancer. Clin Genitourin Cancer. 2016;14(1):e1-8. doi: 10.1016/j.clgc.2015.07.018.  PubMed PMID: 26341038;  PMCID: PMC5767465
  22. Yu J, Kwon YS, Kim S, Han CS, Farber N, Kim J, Byun SS, Kim WJ, Jeon SS, Kim IY. Pathological Outcome following Radical Prostatectomy in Men with Prostate Specific Antigen Greater than 10 ng/ml and Histologically Favorable Risk Prostate Cancer. J Urol. 2016;195(5):1464-70. doi: 10.1016/j.juro.2015.11.031.  PubMed PMID: 26608903 PMCID: PMC26608903.
  23. Davidov T, Nagar M, Kierson M, Chekmareva M, Chen C, Lu SE, Lin Y, Chernyavsky V, Potdevin L, Arumugam D, Barnard N, Trooskin S. Carbonic anhydrase 4 and crystallin alpha-B immunoreactivity may distinguish benign from malignant thyroid nodules in patients with indeterminate thyroid cytology. J Surg Res. 2014;190(2):565-74. doi: 10.1016/j.jss.2014.03.042.  PubMed PMID: 24880201;  PMCID: PMC576764
  24. Cooperman NA, Lu SE, Richter KP, Bernstein SL, Williams JM. Influence of Psychiatric and Personality Disorders on Smoking Cessation Among Individuals in Opiate Dependence Treatment. J Dual Diagn. 2016;12(2):118-28. doi: 10.1080/15504263.2016.1172896.  PubMed PMID: 27064523;  PMCID: PMC5079427.
  25. Jadot M, Boonen M, Thirion J, Wang N, Xing J, Zhao C, Tannous A, Qian M, Zheng H, Everett JK, Moore DF, Sleat DE, Lobel P. Accounting for Protein Subcellular Localization: A Compartmental Map of the Rat Liver Proteome. Mol Cell Proteomics. 2017;16(2):194-212. doi: 10.1074/mcp.M116.064527. PubMed PMID: 27923875;  PMCID: PMC5294208.
  26. Wiseman JA, Meng Y, Nemtsova Y, Matteson PG, Millonig JH, Moore DF, Sleat DE, Lobel P. Chronic Enzyme Replacement to the Brain of a Late Infantile Neuronal Ceroid Lipofuscinosis Mouse Has Differential Effects on Phenotypes of Disease. Mol Ther Methods Clin Dev. 2017;4:204-12. doi: 10.1016/j.omtm.2017.01.004.  PubMed PMID: 28345005;  PMCID: PMC5363315.
  27. Kim DK, Parihar JS, Kwon YS, Kim S, Shinder B, Lee N, Farber N, Ahlering T, Skarecky D, Yuh B, Ruel N, Kim WJ, Rha KH, Kim IY. Risk of complications and urinary incontinence following cytoreductive prostatectomy: a multi-institutional study. Asian J Androl. 2018;20(1):9-14. doi: 10.4103/1008-682X.196852.  PubMed PMID: 28440262;  PMCID: PMC5753561


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