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David J. Foran, PhD

Publications since 2011

Pandya, H. J. Chen, W. Goodell, L. A. Foran, D. J. Desai, J. P. Mechanical phenotyping of breast cancer using MEMS: a method to demarcate benign and cancerous breast tissues. Lab Chip, 14:4523-4532, . (PMID: 25267099)

Pandya, H. J. Roy, R. Chen, W. Chekmareva, M. A. Foran, D. J. Desai, J. P. Accurate characterization of benign and cancerous breast tissues: Aspecific patient studies using piezoresistive microcantilevers. Biosens Bioelectron, In process, . (PMID: 25128621)

Pandya, H. J. Kim, H. T. Roy, R. Chen, W. Cong, L. Zhong, H. Foran, D. J. Desai, J. P. Towards an Automated MEMS-based Characterization of Benign and Cancerous Breast Tissue using Bioimpedance Measurements. Sens Actuators B Chem, 199:259-268, . (PMID: 25013305, PMCID: PMC4084740)

Boregowda, R. K. Olabisi, O. O. Abushahba, W. Jeong, B. S. Haenssen, K. K. Chen, W. Chekmareva, M. Lasfar, A. Foran, D. J. Goydos, J. S. Cohen-Solal, K. A. RUNX2 is overexpressed in melanoma cells and mediates their migration and invasion. Cancer Lett, 348:61-70, . (PMID: 24657655, PMCID: PMC4041161)

Yang, L. Qi, X. Xing, F. Kurc, T. Saltz, J. Foran, D. J. Parallel content-based sub-image retrieval using hierarchical searching. Bioinformatics, 30:996-1002, . (PMID: 24215030, PMCID: PMC3967099)

Roy, R. Chen, W. Cong, L. Goodell, L. Foran, D. Desai, J. Probabilistic Estimation of Mechanical Properties of Biomaterials Using Atomic Force Microscopy. IEEE Trans Biomed Eng, 61:547-556, . (PMID: 24081838, PMCID: PMC3966978)

Chen, W. Wong, C. Vosburgh, E. Levine, A. J. Foran, D. J. Xu, E. Y. High-throughput Image Analysis of Tumor Spheroids: A User-friendly Software Application to Measure the Size of Spheroids Automatically and Accurately. J Vis Exp, :, . (PMID: 25046278)

Qi, X. Wang, D. Rodero, I. Diaz-Montes, J. Gensure, R. H. Xing, F. Zhong, H. Goodell, L. Parashar, M. Foran, D. J. Yang, L. Content-based histopathology image retrieval using CometCloud. BMC Bioinformatics, 15:287, . (PMID: 25155691, PMCID: PMC4161917)

Roy, R. Chen, W. Cong, L. Goodell, L. A. Foran, D. J. Desai, J. P. A Semi-Automated Positioning System for contact-mode Atomic Force Microscopy (AFM). IEEE Trans Autom Sci Eng, 10:, . (PMID: 24294144, PMCID: PMC3840952)

Foran, D. J. Chen, W. Yang, L. Automated image interpretation and computer-assisted diagnostics. Stud Health Technol Inform, 185:77-108, . (PMID: 23542932)

Gensure, R. H. Foran, D. J. Lee, V. M. Gendel, V. M. Jabbour, S. K. Carpizo, D. R. Nosher, J. L. Yang, L. Evaluation of Hepatic Tumor Response to Yttrium-90 Radioembolization Therapy Using Texture Signatures Generated from Contrast-enhanced CT Images. Acad Radiol, 19:1201-1207, . (PMID: 22841288, PMCID: PMC3438382)

Miletti-Gonzalez, K. E. Murphy, K. Kumaran, M. N. Ravindranath, A. K. Wernyj, R. P. Kaur, S. Miles, G. D. Lim, E. Chan, R. Chekmareva, M. Heller, D. S. Foran, D. Chen, W. Reiss, M. Bandera, E. V. Scotto, K. Rodriguez-Rodriguez, L. Identification of function for CD44 intracytoplasmic domain (CD44-ICD): modulation of matrix metalloproteinase 9 (MMP-9) transcription via novel promoter response element. J Biol Chem, 287:18995-19007, . (PMID: 22433859, PMCID: PMC3365933)

Sadimin, E. T. Foran, D. J. Pathology Imaging Informatics for Clinical Practice and Investigative and Translational Research. N Am J Med Sci (Boston), 5:103-109, . (PMID: 22855694, PMCID: PMC3407842)

Qi, X. Xing, F. Foran, D. J. Yang, L. Robust segmentation of overlapping cells in histopathology specimens using parallel seed detection and repulsive level set. IEEE Trans Biomed Eng, 59:754-765, . (PMID: 22167559)

Qi, X. Xing, F. Foran, D. J. Yang, L. A fast, automatic segmentation algorithm for locating and delineating touching cell boundaries in imaged histopathology. Methods Inf Med, 51:260-267, . (PMID: 22526139)

Cukierski, W. J. Nandy, K. Gudla, P. Meaburn, K. J. Misteli, T. Foran, D. J. Lockett, S. J. Ranked retrieval of segmented nuclei for objective assessment of cancer gene repositioning. BMC Bioinformatics, 13:232, . (PMID: 22971117, PMCID: PMC3484015)

Qi, X. Kim, H. Xing, F. Parashar, M. Foran, D. J. Yang, L. The analysis of image feature robustness using cometcloud. J Pathol Inform, 3:33, . (PMID: 23248759, PMCID: PMC3519094)

Foran, D. J. Yang, L. Chen, W. Hu, J. Goodell, L. A. Reiss, M. Wang, F. Kurc, T. Pan, T. Sharma, A. Saltz, J. H. ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology. J Am Med Inform Assoc, 18:403-415, . (PMID: 21606133, PMCID: PMC3128405)

Cohen-Solal, K. A. Merrigan, K. T. Chan, J. L. Goydos, J. S. Chen, W. Foran, D. J. Liu, F. Lasfar, A. Reiss, M. Constitutive Smad linker phosphorylation in melanoma: a mechanism of resistance to transforming growth factor-beta-mediated growth inhibition. Pigment Cell Melanoma Res, 24:512-524, . (PMID: 21477078, PMCID: PMC3108265)

Foran, D. J. Chen, W. Yang, L. Automated image interpretation computer-assisted diagnostics. Anal Cell Pathol (Amst), 34:279-300, . (PMID: 22082571)

Wang, F. Kong, J. Cooper, L. Pan, T. Kurc, T. Chen, W. Sharma, A. Niedermayr, C. Oh, T. W. Brat, D. Farris, A. B. Foran, D. J. Saltz, J. A data model and database for high-resolution pathology analytical image informatics. J Pathol Inform, 2:32, . (PMID: 21845230, PMCID: PMC3153692)