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David J. Foran, PhD

Publications since 2011

Boregowda, R. K. Medina, D. J. Markert, E. Bryan, M. A. Chen, W. Chen, S. Rabkin, A. Vido, M. J. Gunderson, S. I. Chekmareva, M. Foran, D. J. Lasfar, A. Goydos, J. S. Cohen-Solal, K. A. The transcription factor RUNX2 regulates receptor tyrosine kinase expression in melanoma. Oncotarget, In process, . (PMID: 27102439)

Pandya, H. Park, K. Chen, W. Goodell, L. Foran, D. Desai, J. Towards a portable cancer diagnostic tool using a disposable MEMS-based biochip. IEEE Trans Biomed Eng, In process, . (PMID: 26930673)

Pandya, H. J. Park, K. Chen, W. Chekmareva, M. A. Foran, D. J. Desai, J. P. Simultaneous MEMS-based electro-mechanical phenotyping of breast cancer. Lab Chip, 15:3695-3706, . (PMID: 26224116, PMCID: PMC4550491)

Chen, W. Brandes, Z. Roy, R. Chekmareva, M. Pandya, H. J. Desai, J. P. Foran, D. J. Robot-Guided Atomic Force Microscopy for Mechano-Visual Phenotyping of Cancer Specimens. Microsc Microanal, In process, . (PMID: 26343283)

Pandya, H. J. Roy, R. Chen, W. Chekmareva, M. A. Foran, D. J. Desai, J. P. Accurate characterization of benign and cancerous breast tissues: Aspecific patient studies using piezoresistive microcantilevers. Biosens Bioelectron, 63:414-424, . (PMID: 25128621, PMCID: PMC4167594)

Wu, Y. Kwon, Y. S. Labib, M. Foran, D. J. Singer, E. A. Magnetic Resonance Imaging as a Biomarker for Renal Cell Carcinoma. Dis Markers, 2015:648495, . (PMID: 26609190, PMCID: PMC4644550)

Kurc, T. Qi, X. Wang, D. Wang, F. Teodoro, G. Cooper, L. Nalisnik, M. Yang, L. Saltz, J. Foran, D. J. Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies. BMC Bioinformatics, 16:399, . (PMID: 26627175, PMCID: PMC4667532)

Pandya, H. J. Chen, W. Goodell, L. A. Foran, D. J. Desai, J. P. Mechanical phenotyping of breast cancer using MEMS: a method to demarcate benign and cancerous breast tissues. Lab Chip, 14:4523-4532, . (PMID: 25267099, PMCID: PMC4224189)

Pandya, H. J. Kim, H. T. Roy, R. Chen, W. Cong, L. Zhong, H. Foran, D. J. Desai, J. P. Towards an Automated MEMS-based Characterization of Benign and Cancerous Breast Tissue using Bioimpedance Measurements. Sens Actuators B Chem, 199:259-268, . (PMID: 25013305, PMCID: PMC4084740)

Boregowda, R. K. Olabisi, O. O. Abushahba, W. Jeong, B. S. Haenssen, K. K. Chen, W. Chekmareva, M. Lasfar, A. Foran, D. J. Goydos, J. S. Cohen-Solal, K. A. RUNX2 is overexpressed in melanoma cells and mediates their migration and invasion. Cancer Lett, 348:61-70, . (PMID: 24657655, PMCID: PMC4041161)

Yang, L. Qi, X. Xing, F. Kurc, T. Saltz, J. Foran, D. J. Parallel content-based sub-image retrieval using hierarchical searching. Bioinformatics, 30:996-1002, . (PMID: 24215030, PMCID: PMC3967099)

Roy, R. Chen, W. Cong, L. Goodell, L. Foran, D. Desai, J. Probabilistic Estimation of Mechanical Properties of Biomaterials Using Atomic Force Microscopy. IEEE Trans Biomed Eng, 61:547-556, . (PMID: 24081838, PMCID: PMC3966978)

Chen, W. Wong, C. Vosburgh, E. Levine, A. J. Foran, D. J. Xu, E. Y. High-throughput Image Analysis of Tumor Spheroids: A User-friendly Software Application to Measure the Size of Spheroids Automatically and Accurately. J Vis Exp, :, . (PMID: 25046278, PMCID: PMC4212916)

Qi, X. Wang, D. Rodero, I. Diaz-Montes, J. Gensure, R. H. Xing, F. Zhong, H. Goodell, L. Parashar, M. Foran, D. J. Yang, L. Content-based histopathology image retrieval using CometCloud. BMC Bioinformatics, 15:287, . (PMID: 25155691, PMCID: PMC4161917)

Roy, R. Chen, W. Cong, L. Goodell, L. A. Foran, D. J. Desai, J. P. A Semi-Automated Positioning System for contact-mode Atomic Force Microscopy (AFM). IEEE Trans Autom Sci Eng, 10:, . (PMID: 24294144, PMCID: PMC3840952)

Foran, D. J. Chen, W. Yang, L. Automated image interpretation and computer-assisted diagnostics. Stud Health Technol Inform, 185:77-108, . (PMID: 23542932)

Gensure, R. H. Foran, D. J. Lee, V. M. Gendel, V. M. Jabbour, S. K. Carpizo, D. R. Nosher, J. L. Yang, L. Evaluation of Hepatic Tumor Response to Yttrium-90 Radioembolization Therapy Using Texture Signatures Generated from Contrast-enhanced CT Images. Acad Radiol, 19:1201-1207, . (PMID: 22841288, PMCID: PMC3438382)

Miletti-Gonzalez, K. E. Murphy, K. Kumaran, M. N. Ravindranath, A. K. Wernyj, R. P. Kaur, S. Miles, G. D. Lim, E. Chan, R. Chekmareva, M. Heller, D. S. Foran, D. Chen, W. Reiss, M. Bandera, E. V. Scotto, K. Rodriguez-Rodriguez, L. Identification of function for CD44 intracytoplasmic domain (CD44-ICD): modulation of matrix metalloproteinase 9 (MMP-9) transcription via novel promoter response element. J Biol Chem, 287:18995-19007, . (PMID: 22433859, PMCID: PMC3365933)

Sadimin, E. T. Foran, D. J. Pathology Imaging Informatics for Clinical Practice and Investigative and Translational Research. N Am J Med Sci (Boston), 5:103-109, . (PMID: 22855694, PMCID: PMC3407842)

Qi, X. Xing, F. Foran, D. J. Yang, L. Robust segmentation of overlapping cells in histopathology specimens using parallel seed detection and repulsive level set. IEEE Trans Biomed Eng, 59:754-765, . (PMID: 22167559)

Qi, X. Xing, F. Foran, D. J. Yang, L. A fast, automatic segmentation algorithm for locating and delineating touching cell boundaries in imaged histopathology. Methods Inf Med, 51:260-267, . (PMID: 22526139)

Cukierski, W. J. Nandy, K. Gudla, P. Meaburn, K. J. Misteli, T. Foran, D. J. Lockett, S. J. Ranked retrieval of segmented nuclei for objective assessment of cancer gene repositioning. BMC Bioinformatics, 13:232, . (PMID: 22971117, PMCID: PMC3484015)

Qi, X. Kim, H. Xing, F. Parashar, M. Foran, D. J. Yang, L. The analysis of image feature robustness using cometcloud. J Pathol Inform, 3:33, . (PMID: 23248759, PMCID: PMC3519094)

Foran, D. J. Yang, L. Chen, W. Hu, J. Goodell, L. A. Reiss, M. Wang, F. Kurc, T. Pan, T. Sharma, A. Saltz, J. H. ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology. J Am Med Inform Assoc, 18:403-415, . (PMID: 21606133, PMCID: PMC3128405)

Cohen-Solal, K. A. Merrigan, K. T. Chan, J. L. Goydos, J. S. Chen, W. Foran, D. J. Liu, F. Lasfar, A. Reiss, M. Constitutive Smad linker phosphorylation in melanoma: a mechanism of resistance to transforming growth factor-beta-mediated growth inhibition. Pigment Cell Melanoma Res, 24:512-524, . (PMID: 21477078, PMCID: PMC3108265)

Foran, D. J. Chen, W. Yang, L. Automated image interpretation computer-assisted diagnostics. Anal Cell Pathol (Amst), 34:279-300, . (PMID: 22082571)

Wang, F. Kong, J. Cooper, L. Pan, T. Kurc, T. Chen, W. Sharma, A. Niedermayr, C. Oh, T. W. Brat, D. Farris, A. B. Foran, D. J. Saltz, J. A data model and database for high-resolution pathology analytical image informatics. J Pathol Inform, 2:32, . (PMID: 21845230, PMCID: PMC3153692)