Khiabanian Laboratory - Select Publications
- Sokol ES, Pavlick D, Khiabanian H, Frampton GM, Ross JS, Gregg JP, Lara PN, Oesterrich S, Agarwal N, Necchi A, Miller VA, Alexander B, Ali SM, Ganesan S, Chung JH. Pan-cancer analysis of BRCA1 and BRCA2 genomic alterations and their association with genomic instability as measured by genome-wide loss-of-heterozygosity. JCO Precis Oncol. 2020 April 30, 4:442-465.
- Riedlinger GM, Hadigol M, Khiabanian H † ✉, Ganesan S †. Association of JAK2-V617F Mutations Detected by Solid Tumor Sequencing with Coexistent Myeloproliferative Neoplasms. JAMA Oncology 2019. PMID:30605212
- Severson EA, Riedlinger GM, Connelly CF, Vergilio J, Goldfinger M, Ramkissoon S, Frampton GM, Ross JS, Fratella-Calabrese A, Gay L, Ali S, Miller V, Elvin J, Hadigol M, Hirshfield KM, Rodriguez L, Ganesan S ✉, Khiabanian H ✉. Detection of Clonal Hematopoiesis of Indeterminate Potential in Clinical Sequencing of Solid Tumor Specimens. Blood 2018. PMID:29678827
- Hadigol M and Khiabanian H ✉. MERIT reveals the impact of genomic context on sequencing error rate in ultra-deep applications. BMC Bioinformatics 2018. PMID:29884116
- Khiabanian H ✉, Hirshfield KM, Goldfinger M, Bird S, Stein M, Aisner J, Toppmeyer D, Wong S, Chan N, Dhar K, Gheeya J, Vig H, Hadigol M, Pavlick D, Ansari S, Ali S, Xia B, Rodriguez L, Ganesan S ✉. Inference of germline mutational status and evaluation of loss of heterozygosity in high-depth tumor-only sequencing data. JCO Precision Oncology 2018. PMID:30246169
- Rabadan R., Bhanot G., Marsilio S., Chiorazzi N., Pasqualucci L., Khiabanian H ✉. On statistical modeling of sequencing noise in high depth data to assess tumor evolution. Journal of Statistical Physics 2017. PMID:30034030
- Marsilio S., Khiabanian H., Fabbri G., et al. Somatic CLL mutations occur at multiple distinct hematopoietic maturation stages: documentation and cautionary note regarding cell fraction purity. Leukemia 2017. PMID:29203856
- Oshima K. †, Khiabanian H. †, et al. Mutational landscape, clonal evolution patterns and role of RAS mutations in relapsed acute lymphoblastic leukemia. Proceedings of the National Academy of Sciences 2016. PMID:27655895
- Zairis S., Khiabanian H., Blumberg A., Rabadan R. Genomic data analysis in tree spaces. arXiv:1607.07503 2016. PDF
- Spina V. †, Khiabanian H. †, et al. The Genetics of Nodal Marginal Zone Lymphoma. Blood 2016. PMID:27335277
- Rasi S. †, Khiabanian H. †, et al. Clinical impact of small subclones harboring NOTCH1, SF3B1, or BIRC3 mutations in chronic lymphocytic leukemia. Haematologica 2016. PMID:26819056
- Almeida da Silva A. †, Abate F. †, Khiabanian H., et al. The mutational landscape of cutaneous T cell lymphoma and Sézary syndrome. Nature Genetics 2015. PMID:26551667
- Emmett K., Lee A., Khiabanian H. ✉, Rabadan R. ✉ High-resolution genomic surveillance of 2014 ebolavirus using shared subclonal variants. PLoS Currents 2015. PMID:25737802
- Rossi D. †, Khiabanian H. †, et al. Clinical impact of small TP53 mutated subclones in chronic lymphocytic leukemia. Blood 2014. PMID:24501221
- Palomero T. †, Couronné L. †, Khiabanian, H. †, et al. Recurrent mutations in epigenetic regulators, RHOA and FYN kinase in peripheral T cell lymphomas. Nature Genetics 2014. PMID:24413734
- Wang J. †, Khiabanian H. †, Rossi D. †, et al. Tumor Evolutionary Directed Graphs and the History of Chronic Lymphocytic Leukemia. eLife 2014. PMID:25496728
- Khiabanian H. ✉, et al. Viral diversity and clonal evolution from unphased genomic data. BMC Genomics 2014. PMID:25573168
- Zairis S., Khiabanian H., Blumberg A., Rabadan R. Moduli spaces of phylogenetic trees describing tumor evolutionary patterns. Lecture Notes in Computer Science Volume 8609 2014. Springer
- Pasqualucci L., Khiabanian H., et al. Genetics of follicular lymphoma transformation. Cell Reports 2014. PMID:24388756
- Fabbri G. †, Khiabanian H. †, et al. Genetic lesions associated with chronic lymphocytic leukemia transformation to Richter syndrome. The Journal of Experimental Medicine 2013. PMID:24127483
- Tzoneva G. †, Perez Garcia A. †, Carpenter Z. †, Khiabanian H., et al. Activating mutations in the NT5C2 nucleotidase gene drive chemotherapy resistance in relapsed ALL. Nature Medicine 2013. PMID:23377281
- Van Vlierberghe P. †, Palomero T. †, Khiabanian H., et al. PHF6 mutations in T-cell acute lymphoblastic leukemia. Nature Genetics 2010. PMID:20228800
- Trifonov V., Khiabanian H., Rabadan R. Geographic Dependence, Surveillance and the Origins of the 2009 Influenza A (H1N1) Virus. The New England Journal of Medicine 2009. PMID:19474418
