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‡ co-lead;    † equal contribution;    lab members underlined

  • Jalloul N †, Gomy I †, Stokes S, Gusev A, Johnson BE, Lindeman N, Macconaill L, Ganesan S, Garber JE ‡, Khiabanian H ‡. Germline testing data validate inferences of mutational status for variants detected from tumor-only sequencing. JCO Precision Oncology 2021. PMID:34820595
  • Rajagopalan S, Singh A, Khiabanian H. Cilium Expression Score Predicts Glioma Survival. Frontiers Genetics 2021. PMID:34868236
  • Loh J-W, Guiccione C, Di Clemente F, Riedlinger G, Ganesan S, Khiabanian H. All-FIT: Allele-Frequency-based Imputation of Tumor Purity from High-Depth Sequencing Data. Bioinformatics 2020. PMID:31750888
  • Singh A, Bhanot G, Khiabanian H. TuBA: Tunable Biclustering Algorithm reveals clinically relevant tumor transcriptional profiles in breast cancer. GigaScience 2019. PMID:31216036
  • Riedlinger GM, Jalloul N, Poplin E, Mehnert J, Groisberg R, Khiabanian H, Ganesan S. Detection of Three Distinct Clonal Populations Using Circulating Cell Free DNA: A Cautionary Note on the Use of Liquid Biopsy. JCO Precision Oncology 2019. PMID:31588418
  • Loh J-W and Khiabanian H. Leukemia’s Clonal Evolution in Development, Progression, and Relapse. Curr Stem Cell Rep 2019. Springer
  • Riedlinger GM, Hadigol M, Khiabanian H ‡, Ganesan S ‡. Association of JAK2-V617F Mutations Detected by Solid Tumor Sequencing with Coexistent Myeloproliferative Neoplasms. JAMA Oncology 2019. PMID:30605212
  • Severson EA †, Riedlinger GM †, Connelly CF, Vergilio J, Goldfinger M, Ramkissoon S, Frampton GM, Ross JS, Fratella-Calabrese A, Gay L, Ali S, Miller V, Elvin J, Hadigol M, Hirshfield KM, Rodriguez L, Ganesan S ‡, Khiabanian H ‡. Detection of Clonal Hematopoiesis of Indeterminate Potential in Clinical Sequencing of Solid Tumor Specimens. Blood 2018. PMID:29678827
  • Hadigol M and Khiabanian H. MERIT reveals the impact of genomic context on sequencing error rate in ultra-deep applications. BMC Bioinformatics 2018. PMID:29884116
  • Rabadan R, Bhanot G, Marsilio S, Chiorazzi N, Pasqualucci L, Khiabanian H. On statistical modeling of sequencing noise in high depth data to assess tumor evolution. Journal of Statistical Physics 2018. PMID:30034030
  • Khiabanian H †‡, Hirshfield KM †, Goldfinger M, Bird S, Stein M, Aisner J, Toppmeyer D, Wong S, Chan N, Dhar K, Gheeya J, Vig H, Hadigol M, Pavlick D, Ansari S, Ali S, Xia B, Rodriguez L, Ganesan S ‡. Inference of germline mutational status and evaluation of loss of heterozygosity in high-depth tumor-only sequencing data. JCO Precision Oncology 2018. PMID:30246169
  • Oshima K , Khiabanian H , et al. Mutational landscape, clonal evolution patterns and role of RAS mutations in relapsed acute lymphoblastic leukemia. Proceedings of the National Academy of Sciences 2016. PMID:27655895
  • Spina V , Khiabanian H , et al. The Genetics of Nodal Marginal Zone Lymphoma. Blood 2016. PMID:27335277
  • Rasi S , Khiabanian H , et al. Clinical impact of small subclones harboring NOTCH1, SF3B1, or BIRC3 mutations in chronic lymphocytic leukemia. Haematologica 2016. PMID:26819056
  • Emmett K, Lee A, Khiabanian H , Rabadan R . High-resolution genomic surveillance of 2014 ebolavirus using shared subclonal variants. PLoS Currents 2015. PMID:25737802
  • Rossi D , Khiabanian H , et al. Clinical impact of small TP53 mutated subclones in chronic lymphocytic leukemia. Blood 2014 (Plenary paper). PMID:24501221
  • Palomero T , Couronné L , Khiabanian H , et al. Recurrent mutations in epigenetic regulators, RHOA and FYN kinase in peripheral T cell lymphomas. Nature Genetics 2014. PMID:24413734
  • Wang J , Khiabanian H , Rossi D. , et al. Tumor Evolutionary Directed Graphs and the History of Chronic Lymphocytic Leukemia. eLife 2014. PMID:25496728
  • Zairis S, Khiabanian H, Blumberg A, Rabadan R. Moduli spaces of phylogenetic trees describing tumor evolutionary patterns. Lecture Notes in Computer Science Volume 8609 2014. Link
  • Pasqualucci L, Khiabanian H, et al. Genetics of follicular lymphoma transformation. Cell Reports 2014. PMID:24388756
  • Fabbri G , Khiabanian H , et al. Genetic lesions associated with chronic lymphocytic leukemia transformation to Richter syndrome. The Journal of Experimental Medicine 2013. PMID:24127483
  • Trifonov V, Khiabanian H, Rabadan R. Geographic Dependence, Surveillance and the Origins of the 2009 Influenza A (H1N1) Virus. The New England Journal of Medicine 2009. PMID:19474418