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Stephen K. Burley, MD, DPhil

Publications since 2011

Kim, S. J. Fernandez-Martinez, J. Sampathkumar, P. Martel, A. Matsui, T. Tsuruta, H. Weiss, T. Markina-Inarrairaegui, A. Bonanno, J. B. Sauder, J. M. Burley, S. K. Almo, S. C. Rout, M. Sali, A. Integrative structure-function mapping of the nucleoporin Nup133 suggests a conserved mechanism for membrane anchoring of the nuclear pore complex. Mol Cell Proteomics, In process, . (PMID: 25139911)

Korczynska, M. Xiang, D. F. Zhang, Z. Xu, C. Narindoshvili, T. Kamat, S. S. Williams, H. J. Chang, S. S. Kolb, P. Hillerich, B. Sauder, J. M. Burley, S. K. Almo, S. C. Swaminathan, S. Shoichet, B. K. Raushel, F. M. Functional Annotation and Structural Characterization of a Novel Lactonase Hydrolyzing d-Xylono-1,4-lactone-5-phosphate and l-Arabino-1,4-lactone-5-phosphate. Biochemistry, 53:4727-4738, . (PMID: 24955762, PMCID: PMC4108184)

Odokonyero, D. Sakai, A. Patskovsky, Y. Malashkevich, V. N. Fedorov, A. A. Bonanno, J. B. Fedorov, E. V. Toro, R. Agarwal, R. Wang, C. Ozerova, N. D. Yew, W. S. Sauder, J. M. Swaminathan, S. Burley, S. K. Almo, S. C. Glasner, M. E. Loss of quaternary structure is associated with rapid sequence divergence in the OSBS family. Proc Natl Acad Sci U S A, 111:8535-8540, . (PMID: 24872444, PMCID: PMC4060685)

Goodsell, D. S. Burley, S. K. Berman, H. M. Revealing structural views of biology. Biopolymers, 99:817-824, . (PMID: 23821527)

Odokonyero, D. Ragumani, S. Swaminathan, S. Lopez, M. S. Bonanno, J. B. Ozerova, N. D. Woodard, D. R. Machala, B. W. Burley, S. K. Almo, S. C. Glasner, M. E. Divergent Evolution of Ligand Binding in the o-Succinylbenzoate Synthase Family. Biochemistry, 52:7512-7521, . (PMID: 24060347, PMCID: PMC3908897)

Daughtry, K. D. Huang, H. Malashkevich, V. Patskovsky, Y. Liu, W. Ramagopal, U. Sauder, J. M. Burley, S. K. Almo, S. C. Dunaway-Mariano, D. Allen, K. N. Structural Basis for the Divergence of Substrate Specificity and Biological Function within HAD Phosphatases in Lipopolysaccharide and Sialic Acid Biosynthesis. Biochemistry, 52:5372-5386, . (PMID: 23848398)

Almo, S. C. Garforth, S. J. Hillerich, B. S. Love, J. D. Seidel, R. D. Burley, S. K. Protein production from the structural genomics perspective: achievements and future needs. Curr Opin Struct Biol, 23:335-344, . (PMID: 23642905)

Sampathkumar, P. Kim, S. J. Upla, P. Rice, W. J. Phillips, J. Timney, B. L. Pieper, U. Bonanno, J. B. Fernandez-Martinez, J. Hakhverdyan, Z. Ketaren, N. E. Matsui, T. Weiss, T. M. Stokes, D. L. Sauder, J. M. Burley, S. K. Sali, A. Rout, M. P. Almo, S. C. Structure, dynamics, evolution, and function of a major scaffold component in the nuclear pore complex. Structure, 21:560-571, . (PMID: 23499021, PMCID: PMC3755625)

Burley, S. K. PDB40: The Protein Data Bank celebrates its 40th birthday. Biopolymers, 99:165-169, . (PMID: 23280389)

Palani, K. Burley, S. K. Swaminathan, S. Structure of alanine racemase from Oenococcus oeni with bound pyridoxal 5'-phosphate. Acta Crystallogr Sect F Struct Biol Cryst Commun, 69:15-19, . (PMID: 23295479, PMCID: PMC3539696)

Palani, K. Kumaran, D. Burley, S. K. Swaminathan, S. Structure of a periplasmic glucose-binding protein from Thermotoga maritima. Acta Crystallogr Sect F Struct Biol Cryst Commun, 68:1460-1464, . (PMID: 23192024, PMCID: PMC3509965)

Garside, E. L. Schellenberg, M. J. Gesner, E. M. Bonanno, J. B. Sauder, J. M. Burley, S. K. Almo, S. C. Mehta, G. MacMillan, A. M. Cas5d processes pre-crRNA and is a member of a larger family of CRISPR RNA endonucleases. RNA, 18:2020-2028, . (PMID: 23006625, PMCID: PMC3479392)

Warlick, B. P. Evans, B. S. Erb, T. J. Ramagopal, U. A. Sriram, J. Imker, H. J. Sauder, J. M. Bonanno, J. B. Burley, S. K. Tabita, F. R. Almo, S. C. Sweedler, J. S. Gerlt, J. A. 1-methylthio-D-xylulose 5-phosphate methylsulfurylase: a novel route to 1-deoxy-D-xylulose 5-phosphate in Rhodospirillum rubrum. Biochemistry, 51:8324-8326, . (PMID: 23035785, PMCID: PMC3490199)

Sampathkumar, P. Kim, S. J. Manglicmot, D. Bain, K. T. Gilmore, J. Gheyi, T. Phillips, J. Pieper, U. Fernandez-Martinez, J. Franke, J. D. Matsui, T. Tsuruta, H. Atwell, S. Thompson, D. A. Emtage, J. S. Wasserman, S. R. Rout, M. P. Sali, A. Sauder, J. M. Almo, S. C. Burley, S. K. Atomic structure of the nuclear pore complex targeting domain of a Nup116 homologue from the yeast, Candida glabrata. Proteins, 80:2110-2116, . (PMID: 22544723, PMCID: PMC3686472)

Wasserman, S. R. Koss, J. W. Sojitra, S. T. Morisco, L. L. Burley, S. K. Rapid-access, high-throughput synchrotron crystallography for drug discovery. Trends Pharmacol Sci, 33:261-267, . (PMID: 22521107)

Hobbs, M. E. Malashkevich, V. Williams, H. J. Xu, C. Sauder, J. M. Burley, S. K. Almo, S. C. Raushel, F. M. Structure and catalytic mechanism of LigI: insight into the amidohydrolase enzymes of cog3618 and lignin degradation. Biochemistry, 51:3497-3507, . (PMID: 22475079, PMCID: PMC3416963)

Agarwal, R. Burley, S. K. Swaminathan, S. Structural insight into mechanism and diverse substrate selection strategy of L-ribulokinase. Proteins, 80:261-268, . (PMID: 22072612, PMCID: PMC3240725)

Kamat, S. S. Holmes-Hampton, G. P. Bagaria, A. Kumaran, D. Tichy, S. E. Gheyi, T. Zheng, X. Bain, K. Groshong, C. Emtage, S. Sauder, J. M. Burley, S. K. Swaminathan, S. Lindahl, P. A. Raushel, F. M. The catalase activity of diiron adenine deaminase. Protein Sci, 20:2080-2094, . (PMID: 21998098, PMCID: PMC3302651)

Suttisansanee, U. Lau, K. Lagishetty, S. Rao, K. N. Swaminathan, S. Sauder, J. M. Burley, S. K. Honek, J. F. Structural variation in bacterial glyoxalase I enzymes: investigation of the metalloenzyme glyoxalase I from Clostridium acetobutylicum. J Biol Chem, 286:38367-38374, . (PMID: 21914803, PMCID: PMC3207458)

Goble, A. M. Zhang, Z. Sauder, J. M. Burley, S. K. Swaminathan, S. Raushel, F. M. Pa0148 from Pseudomonas aeruginosa catalyzes the deamination of adenine. Biochemistry, 50:6589-6597, . (PMID: 21710971, PMCID: PMC3151671)

Burley, S. K. Sonenberg, N. Gimme phospho-serine five! Capping enzyme guanylyltransferase recognition of the RNA polymerase II CTD. Mol Cell, 43:163-165, . (PMID: 21777807)

Teplova, M. Malinina, L. Darnell, J. C. Song, J. Lu, M. Abagyan, R. Musunuru, K. Teplov, A. Burley, S. K. Darnell, R. B. Patel, D. J. Protein-RNA and protein-protein recognition by dual KH1/2 domains of the neuronal splicing factor Nova-1. Structure, 19:930-944, . (PMID: 21742260, PMCID: PMC3134789)

Shi, W. Punta, M. Bohon, J. Sauder, J. M. D'Mello, R. Sullivan, M. Toomey, J. Abel, D. Lippi, M. Passerini, A. Frasconi, P. Burley, S. K. Rost, B. Chance, M. R. Characterization of metalloproteins by high-throughput X-ray absorption spectroscopy. Genome Res, 21:898-907, . (PMID: 21482623, PMCID: PMC3106322)

Sampathkumar, P. Gheyi, T. Miller, S. A. Bain, K. T. Dickey, M. Bonanno, J. B. Kim, S. J. Phillips, J. Pieper, U. Fernandez-Martinez, J. Franke, J. D. Martel, A. Tsuruta, H. Atwell, S. Thompson, D. A. Emtage, J. S. Wasserman, S. R. Rout, M. P. Sali, A. Sauder, J. M. Burley, S. K. Structure of the C-terminal domain of Saccharomyces cerevisiae Nup133, a component of the nuclear pore complex. Proteins, 79:1672-1677, . (PMID: 21365675, PMCID: PMC3350809)

Bagaria, A. Kumaran, D. Burley, S. K. Swaminathan, S. Structural basis for a ribofuranosyl binding protein: insights into the furanose specific transport. Proteins, 79:1352-1357, . (PMID: 21387413, PMCID: PMC3077950)

Kamat, S. S. Bagaria, A. Kumaran, D. Holmes-Hampton, G. P. Fan, H. Sali, A. Sauder, J. M. Burley, S. K. Lindahl, P. A. Swaminathan, S. Raushel, F. M. Catalytic mechanism and three-dimensional structure of adenine deaminase. Biochemistry, 50:1917-1927, . (PMID: 21247091, PMCID: PMC3059353)

Kamat, S. S. Fan, H. Sauder, J. M. Burley, S. K. Shoichet, B. K. Sali, A. Raushel, F. M. Enzymatic deamination of the epigenetic base N-6-methyladenine. J Am Chem Soc, 133:2080-2083, . (PMID: 21275375, PMCID: PMC3043370)

Zhang, Z. Zhou, R. Sauder, J. M. Tonge, P. J. Burley, S. K. Swaminathan, S. Structural and functional studies of fatty acyl adenylate ligases from E. coli and L. pneumophila. J Mol Biol, 406:313-324, . (PMID: 21185305, PMCID: PMC3040979)

Pieper, U. Webb, B. M. Barkan, D. T. Schneidman-Duhovny, D. Schlessinger, A. Braberg, H. Yang, Z. Meng, E. C. Pettersen, E. F. Huang, C. C. Datta, R. S. Sampathkumar, P. Madhusudhan, M. S. Sjolander, K. Ferrin, T. E. Burley, S. K. Sali, A. ModBase, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Res, 39:D465-D474, . (PMID: 21097780, PMCID: PMC3013688)