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Researcher Publications

David J. Foran, PhD

Selected Publications

  • S. Panayides et al., "AI in Medical Imaging Informatics: Current Challenges and Future Directions," in IEEE Journal of Biomedical and Health Informatics, vol. 24, no. 7, pp. 1837-1857, July 2020, doi: 10.1109/JBHI.2020.2991043.
  • Ren J, Singer EA, Sadimin E, Foran DJ, Qi X. Statistical Analysis of Survival Models Using Feature Quantification on Prostate Cancer Histopathological Images. J Pathol Inform. 2019;10:30. PubMed PMID: 31620309; PubMed Central PMCID: PMC6788183.  
  • Ren J, Hacihaliloglu I, Singer EA, Foran DJ, Qi X. Unsupervised Domain Adaptation for Classification of Histopathology Whole-Slide Images. Front Bioeng Biotechnol. 2019;7:102. PubMed PMID: 31158269; PubMed Central PMCID: PMC6529804.  
  • Ren J, Karagoz K, Gatza ML, Singer EA, Sadimin E, Foran DJ, Qi X. Recurrence analysis on prostate cancer patients with Gleason score 7 using integrated histopathology whole-slide images and genomic data through deep neural networks. J Med Imaging (Bellingham). 2018 Oct;5(4):047501. PubMed PMID: 30840742; PubMed Central PMCID: PMC6237203.  
  • Foran DJ, Chen W, Chu H, Sadimin E, Loh E, Riedlinger G, Goodell LA, Ganesan S, Hirshfield KM, Rodriguez L, DiPaola RS. (2017) Roadmap to a Comprehensive Clinical Data Warehouse for Precision Medicine Applications in Oncology. Cancer Informatics. 2017 Mar 2;16:1176935117694349. doi: 10.1177/1176935117694349. PMCID: PMC5392017.
  • Wu Y, Zou J, Murillo P, Hassan O, Nosher JL, Amorosa JK, Yue N Jabbour S, Foran DJ. (2016) SU-F-J-207: Non-Small Cell Lung Cancer Patient Survival Prediction with Quantitative Tumor Textures Analysis in Baseline CT. Medical Physics. 2016 Jun;43(6):3456. doi: 10.1118/1.4956115. PMID:28046776.
  • Su H, Shen Y, Xing F, Qi X, Hirshfield KM, Yang L, Foran DJ. (2015) Robust Automatic Breast Cancer Staging Using a Combination of Functional Genomics and Image-Omics. Su H, Xing F, Shen Y, Qi X, Yang L. Proceeding of the IEEE International Conference on Engineering in Medicine and Biology Society. 015 Aug;2015:7226-9. doi: 10.1109/EMBC.2015.7320059, 2015. PMID:26737959[PubMed - in process].
  • Kurc T, Qi X, Wang D, Wang F, Teodoro G, Cooper L, Nalisnik M, Yang L, Saltz J, Foran DJ. (2015) Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies. BMC Bioinformatics. Dec 1;16:399. doi: 10.1186/s12859-015-0831-6, 2015. PMID:26627175[PubMed - in process] PMCID:PMC4667532.
  • Pandya HJ, Kim HT, Roy R, Chen W, Cong L, Zhong H, Foran DJ, Desai JP. (2014) Towards an automated MEMS-based characterization of benign and cancerous breast tissue using bioimpedance measurements. Sens Actuators B Chem. Aug 1;199:259-268. PMCID: PMC4084740.
  • Gensure RH, Foran DJ, Lee VM, Gendel VM, Jabbour SK, Carpizo DR, Nosher JL, Yang L. (2012) Evaluation of hepatic tumor response to yttrium-90 radioembolization therapy using texture signatures generated from contrast-enhanced CT images. Acad Radiol. 2012 Oct;19(10):1201-7. doi: 10.1016/j.acra.2012.04.015. Epub Jul 26. PMCID:PMC3438382.
  • Foran DJ, Yang L, Chen W, Hu J, Goodell LA, Reiss M, Wang F, Kurc T, Pan T, Sharma A, Saltz JH. (2011) ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology. J Am Med Inform Assoc. Jul- Aug;18(4):403-15. PMCID: PMC3128405.
  • Yang L, Chen W, Meer P, Feldman MD, Goodell LA, Bagg A, Foran, DJ. (2009) PathMiner: a web based tool for computer assisted diagnostics in pathology. IEEE Transactions on Information Technology in Biomedicine.13(3):291-299. PMCID:PMC3683402.
  • Yang L, Chen W, Meer P, Salaru G, Goodell LA, Berstis V, Foran DJ. (2009) Virtual microscopy and grid-enabled decision support for large-scale analysis of imaged pathology specimens. 30. IEEE Trans Inf Technol Biomed. Jul;13(4):636-44. PMCID: PMC3683401.
  • Niculescu G, Nosher JL, Schneider MD, Foran DJ. (2009) A deformable model for tracking tumors across consecutive imaging studies. Int J Comput Assist Radiol Surg. Jun;4(4):337-47. doi: 10.1007/s11548-009-0298-x. PMCID: PMC2747734.
  • Kim H, Parashar M, Foran DJ, Yang L. (2009) Investigating the Use of Cloudbursts for High-Throughput Medical Image Registration. Proc IEEE/ACM Int Conf Grid Computing. 2009 Oct 13;2009:34-41. PMCID: PMC2904524.
  • Yang L, Chen W, Meer P, Feldman MD, Goodell LA, Bagg A, He W, Foran DJ. PathMiner: A Web Based Tool for Computer Assisted Diagnostics in Pathology. IEEE Transactions on Information Technology in Biomedicine.13(3):291-299, 2009. PMID:19171530[PubMed - indexed for MEDLINE] PMCID:PMC3683402.
  • Tuzel O, Yang L, Meer P, Foran DJ. (2007) Classification of hematologic malignancies using texton signatures. Pattern Anal Appl. Oct 1;10(4):277-290. PMCID:PMC2772183.
  • Chen W, Meer P, Georgescu B, He W, Goodell LA, Foran DJ. (2005) Image mining for investigative pathology using optimized feature extraction and data fusion. Comput Methods Programs Biomed. Jul;79(1):59-72. PMID:15908036.
  • Foran DJ, Comaniciu D, Meer P, Goodell LA. (2000) Computer-assisted discrimination among malignant lymphomas and leukemia using immunophenotyping, intelligent image repositories, and telemicroscopy. IEEE Trans Inf Technol Biomed. Dec;4(4):265-73. PMID:11206811.

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